deepmd.dpmodel.array_api

deepmd.dpmodel.array_api#

Utilities for the array API.

Attributes#

Array

Functions#

`xp_swapaxes`(→ Array)
`xp_take_along_axis`(→ Array)
`xp_take_first_n`(→ Array)	Take the first n elements along dim.
`xp_scatter_sum`(→ Array)	Reduces all values from the src tensor to the indices specified in the index tensor.
`xp_add_at`(→ Array)	Adds values to the specified indices of x in place or returns new x (for JAX).
`xp_sigmoid`(→ Array)	Compute the sigmoid function.
`xp_setitem_at`(→ Array)	Set items at boolean mask indices.
`xp_bincount`(→ Array)	Counts the number of occurrences of each value in x.

Module Contents#

deepmd.dpmodel.array_api.Array[source]#

deepmd.dpmodel.array_api.xp_swapaxes(a: Array, axis1: int, axis2: int) → Array[source]#

deepmd.dpmodel.array_api.xp_take_along_axis(arr: Array, indices: Array, axis: int) → Array[source]#

deepmd.dpmodel.array_api.xp_take_first_n(arr: Array, dim: int, n: int) → Array[source]#

Take the first n elements along dim.

For torch tensors, uses torch.index_select so that torch.export does not emit a contiguity guard that would prevent the nall == nloc (no-PBC) case from working. For numpy / jax, uses regular slicing.

deepmd.dpmodel.array_api.xp_scatter_sum(input: Array, dim: int, index: Array, src: Array) → Array[source]#

Reduces all values from the src tensor to the indices specified in the index tensor.

This function is similar to PyTorch’s scatter_add and JAX’s scatter_sum. It adds values from src to input at positions specified by index along the given dimension.

deepmd.dpmodel.array_api.xp_add_at(x: Array, indices: Array, values: Array) → Array[source]#: Adds values to the specified indices of x in place or returns new x (for JAX).

deepmd.dpmodel.array_api.xp_sigmoid(x: Array) → Array[source]#

Compute the sigmoid function.

JAX and PyTorch have optimized sigmoid implementations. See jax-ml/jax#15617

deepmd.dpmodel.array_api.xp_setitem_at(x: Array, mask: Array, values: Array) → Array[source]#

Set items at boolean mask indices.

For JAX and PyTorch arrays, returns a new array (non-mutating). For NumPy arrays, modifies in-place and returns the same array.

Parameters:

xArray: The array to modify
maskArray: Boolean mask indicating positions to set
valuesArray: Values to set at masked positions

Returns:

Array: Modified array (new array for JAX/PyTorch, same array for NumPy)

deepmd.dpmodel.array_api.xp_bincount(x: Array, weights: Array | None = None, minlength: int = 0) → Array[source]#: Counts the number of occurrences of each value in x.